Ceric.20G080200.1 (emb1629, APO2, Ceric.20G080200)


Aliases : emb1629, APO2, Ceric.20G080200

Description : organelle RNA splicing factor *(APO) & original description: pacid=50567598 polypeptide=Ceric.20G080200.1.p locus=Ceric.20G080200 ID=Ceric.20G080200.1.v2.1 annot-version=v2.1


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.20G080200.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00189370 APO1,... APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ehy_g25543 APO1 organelle RNA splicing factor *(APO) & original description: none 0.07 OrthoFinder output from all 47 species
Len_g03244 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR023342 APO_dom 342 459
IPR023342 APO_dom 116 298
No external refs found!