Ceric.20G041000.1 (Ceric.20G041000)

Aliases : Ceric.20G041000

Description : regulatory helicase *(RTEL) & original description: pacid=50567057 polypeptide=Ceric.20G041000.1.p locus=Ceric.20G041000 ID=Ceric.20G041000.1.v2.1 annot-version=v2.1

Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.20G041000.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G20720	No alias	RAD3-like DNA-binding helicase protein	0.04	OrthoFinder output from all 47 species
Aop_g18157	No alias	regulatory helicase *(RTEL) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20363	No alias	dsDNA helicase *(FANCJ) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene31350.t1	Aspi01Gene31350	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene31351.t1	Aspi01Gene31351	regulatory helicase *(RTEL) & original description: none	0.05	OrthoFinder output from all 47 species
Cre02.g089608	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Dde_g09155	No alias	dsDNA helicase *(FANCJ) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01013389001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
GSVIVT01017107001	No alias	No description available	0.09	OrthoFinder output from all 47 species
GSVIVT01017108001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.09	OrthoFinder output from all 47 species
Gb_04351	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Gb_36663	No alias	Regulator of telomere elongation helicase 1 homolog...	0.05	OrthoFinder output from all 47 species
Mp7g07280.1	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Nbi_g17580	No alias	dsDNA helicase *(FANCJ) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g079510.3.1	Solyc10g079510	Regulator of telomere elongation helicase 1 homolog...	0.07	OrthoFinder output from all 47 species
Tin_g31760	No alias	regulatory helicase *(RTEL) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e020587_P002	Zm00001e020587	Regulator of telomere elongation helicase 1 homolog...	0.04	OrthoFinder output from all 47 species
Zm00001e034917_P001	Zm00001e034917	Regulator of telomere elongation helicase 1 homolog...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010614	DEAD_2	93	253
IPR006555	ATP-dep_Helicase_C	507	701

External Links

No external refs found!

Ceric.20G041000.1 (Ceric.20G041000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation