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  5. Ceric.1Z065200.1

Ceric.1Z065200.1 (Ceric.1Z065200)


Aliases : Ceric.1Z065200

Description : associated component *(HDC1) of histone deacetylase machineries & original description: pacid=50617057 polypeptide=Ceric.1Z065200.1.p locus=Ceric.1Z065200 ID=Ceric.1Z065200.1.v2.1 annot-version=v2.1


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.1Z065200.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Gb_35031 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
LOC_Os07g29450.1 LOC_Os07g29450 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Mp3g12140.1 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Ore_g06630 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ppi_g03202 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.11 OrthoFinder output from all 47 species
Tin_g13819 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e010714_P003 Zm00001e010714 associated component HDC1/Rxt3 of histone deacetylase machineries 0.06 OrthoFinder output from all 47 species
Zm00001e022328_P001 Zm00001e022328 associated component HDC1/Rxt3 of histone deacetylase machineries 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 519 561
No external refs found!