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  5. Ceric.1Z022800.1

Ceric.1Z022800.1 (PSBD, Ceric.1Z022800)


Aliases : PSBD, Ceric.1Z022800

Description : component *(PsbD/D2) of PS-II reaction center complex & original description: pacid=50586375 polypeptide=Ceric.1Z022800.1.p locus=Ceric.1Z022800 ID=Ceric.1Z022800.1.v2.1 annot-version=v2.1


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.1Z022800.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
AMTR_s00071p00011330 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
AMTR_s00090p00098500 PSBA Photosystem II protein D1 OS=Nephroselmis olivacea 0.04 OrthoFinder output from all 47 species
AMTR_s00102p00106890 PSBD,... Photosystem II D2 protein OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00172p00027480 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00172p00030370 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00172p00038240 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00172p00040120 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00390p00002060 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
ATCG00020 PSBA photosystem II reaction center protein A 0.17 OrthoFinder output from all 47 species
ATCG00270 PSBD photosystem II reaction center protein D 0.07 OrthoFinder output from all 47 species
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.15 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.17 OrthoFinder output from all 47 species
Als_g05104 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Als_g08173 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Aob_g01728 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.1 OrthoFinder output from all 47 species
Cba_g05717 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Cba_g74869 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.03G055000.1 PSBA, Ceric.03G055000 not classified & original description: pacid=50572846... 0.05 OrthoFinder output from all 47 species
Ceric.23G039900.1 PSBA, Ceric.23G039900 not classified & original description: pacid=50611232... 0.08 OrthoFinder output from all 47 species
Ceric.23G081300.1 PSBD, Ceric.23G081300 component *(PsbD/D2) of PS-II reaction center complex &... 0.14 OrthoFinder output from all 47 species
Ceric.33G023400.1 PSBD, Ceric.33G023400 not classified & original description: pacid=50607236... 0.04 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
GSVIVT01010924001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.06 OrthoFinder output from all 47 species
GSVIVT01016441001 PSBA Photosystem II protein D1 OS=Vitis vinifera 0.07 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.08 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.1 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.1 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.1 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.06 OrthoFinder output from all 47 species
LOC_Os02g24634.1 PSBD, LOC_Os02g24634 component PsbD/D2 of PS-II reaction center complex 0.12 OrthoFinder output from all 47 species
LOC_Os04g16872.1 PSBD, LOC_Os04g16872 component PsbD/D2 of PS-II reaction center complex 0.23 OrthoFinder output from all 47 species
LOC_Os10g21192.1 PSBA, LOC_Os10g21192 component PsbA/D1 of PS-II reaction center complex 0.21 OrthoFinder output from all 47 species
LOC_Os10g39880.1 PSBA, LOC_Os10g39880 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
LOC_Os12g19580.1 PSBA, LOC_Os12g19580 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.21 OrthoFinder output from all 47 species
Len_g50353 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Lfl_g02222 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.08 OrthoFinder output from all 47 species
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.09 OrthoFinder output from all 47 species
Nbi_g06167 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g40674 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.11 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.11 OrthoFinder output from all 47 species
Pnu_g00529 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Pnu_g14362 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004175 PSBA not classified & original description: CDS=1-357 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021119 PSBA not classified & original description: CDS=1-291 0.05 OrthoFinder output from all 47 species
Sam_g05154 No alias component *(PsbA/D1) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 OrthoFinder output from all 47 species
Smo139195 PSBA Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.06 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.07 OrthoFinder output from all 47 species
Solyc00g230080.1.1 PSBD, Solyc00g230080 Photosystem II D2 protein OS=Tupiella akineta... 0.04 OrthoFinder output from all 47 species
Solyc00g500130.1.1 PSBA, Solyc00g500130 component PsbA/D1 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
Solyc00g500200.1.1 PSBA, Solyc00g500200 component PsbA/D1 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
Solyc00g500296.1.1 PSBA, Solyc00g500296 component PsbA/D1 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
Solyc00g500329.1.1 PSBA, Solyc00g500329 component PsbA/D1 of PS-II reaction center complex 0.19 OrthoFinder output from all 47 species
Solyc02g021290.1.1 PSBA, Solyc02g021290 Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.04 OrthoFinder output from all 47 species
Solyc11g030830.1.1 PSBA, Solyc11g030830 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g01230 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e015953_P001 PSBD, Zm00001e015953 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Zm00001e042043_P001 PSBD, Zm00001e042043 Photosystem II D2 protein OS=Angiopteris evecta... 0.03 OrthoFinder output from all 47 species
Zm00001e042109_P001 PSBD, Zm00001e042109 Photosystem II D2 protein OS=Angiopteris evecta... 0.03 OrthoFinder output from all 47 species
Zm00001e042113_P001 PSBA, Zm00001e042113 Photosystem II protein D1 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Zm00001e042158_P001 PSBD, Zm00001e042158 Photosystem II D2 protein OS=Angiopteris evecta... 0.03 OrthoFinder output from all 47 species
Zm00001e042173_P001 PSBD, Zm00001e042173 Photosystem II D2 protein OS=Angiopteris evecta... 0.03 OrthoFinder output from all 47 species
Zm00001e042176_P001 PSBA, Zm00001e042176 component PsbA/D1 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e042427_P001 PSBD, Zm00001e042427 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 2 285
No external refs found!