Ceric.1Z018300.1 (YCF4, Ceric.1Z018300)

Aliases : YCF4, Ceric.1Z018300

Description : protein involved in PS-I assembly *(YCF4) & original description: pacid=50586340 polypeptide=Ceric.1Z018300.1.p locus=Ceric.1Z018300 ID=Ceric.1Z018300.1.v2.1 annot-version=v2.1

Gene families : OG0009318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009318_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.1Z018300.1
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02490p00007250	YCF4,...	Photosystem I assembly protein Ycf4 OS=Amborella trichopoda	0.03	OrthoFinder output from all 47 species
ATCG00520	YCF4	unfolded protein binding	0.04	OrthoFinder output from all 47 species
Aev_g15963	YCF4	protein involved in PS-I assembly *(YCF4) & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0001.g000196	No alias	not classified & original description: CDS=1-402	0.03	OrthoFinder output from all 47 species
Ceric.33G022400.1	YCF4, Ceric.33G022400	protein involved in PS-I assembly *(YCF4) & original...	0.04	OrthoFinder output from all 47 species
LOC_Os02g24604.1	YCF4, LOC_Os02g24604	YCF4 protein involved in PS-I assembly	0.03	OrthoFinder output from all 47 species
LOC_Os06g39744.1	YCF4, LOC_Os06g39744	YCF4 protein involved in PS-I assembly	0.03	OrthoFinder output from all 47 species
Solyc00g500019.1.1	YCF4, Solyc00g500019	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009522	photosystem I	IEA	Interproscan
CC	GO:0009579	thylakoid	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009539	photosystem II reaction center	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003359	PSI_Ycf4_assembly	1	151

External Links

No external refs found!

Ceric.1Z018300.1 (YCF4, Ceric.1Z018300)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation