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  5. Ceric.1Z008300.1

Ceric.1Z008300.1 (PDF2, Ceric.1Z008300)


Aliases : PDF2, Ceric.1Z008300

Description : HD-ZIP IV-type transcription factor & original description: pacid=50571118 polypeptide=Ceric.1Z008300.1.p locus=Ceric.1Z008300 ID=Ceric.1Z008300.1.v2.1 annot-version=v2.1


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.1Z008300.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g09754 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009667 PDF2 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0100.g044331 PDF2 HD-ZIP IV-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0131.g049156 PDF2 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g70526 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g03815 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g41966 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029396001 EDT1, HDG11, ATHDG11 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01030605001 HDG2 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
LOC_Os10g42490.1 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_10433688g0010 ATML1 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_16767g0010 PDF2 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
MA_761114g0010 ATML1 transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Mp7g09710.1 ATML1 transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Msp_g26336 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g026070.4.1 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
Zm00001e002453_P001 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 596 820
IPR001356 Homeobox_dom 400 454
IPR001356 Homeobox_dom 107 162
No external refs found!