Ceric.19G039200.1 (Ceric.19G039200)

Aliases : Ceric.19G039200

Description : SSU processome assembly factor *(UTP21) & original description: pacid=50575328 polypeptide=Ceric.19G039200.1.p locus=Ceric.19G039200 ID=Ceric.19G039200.1.v2.1 annot-version=v2.1

Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.19G039200.1
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
Adi_g103599	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Ala_g07767	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0074.g037313	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.51	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre10.g466250	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g02020	No alias	SSU processome assembly factor *(UTP21) & original...	0.08	OrthoFinder output from all 47 species
Ehy_g18111	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Gb_24979	No alias	SSU processome assembly factor (UTP21)	0.04	OrthoFinder output from all 47 species
LOC_Os06g43690.1	LOC_Os06g43690	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species
Solyc01g087670.3.1	Solyc01g087670	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species
Zm00001e037473_P002	Zm00001e037473	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	549	585
IPR001680	WD40_repeat	468	502
IPR007319	SSU_processome_Utp21	697	916
IPR024977	Apc4_WD40_dom	190	276

External Links

No external refs found!

Ceric.19G039200.1 (Ceric.19G039200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation