Ceric.18G010900.1 (MED34, ATRECQ2,...)


Aliases : MED34, ATRECQ2, RECQL2, Ceric.18G010900

Description : not classified & original description: pacid=50621519 polypeptide=Ceric.18G010900.1.p locus=Ceric.18G010900 ID=Ceric.18G010900.1.v2.1 annot-version=v2.1


Gene families : OG0007173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007173_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.18G010900.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00186260 ATRECQ4A,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Aop_g69305 ATRECQ4A, ATSGS1, RECQ4A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008369 MED34, ATRECQ2, RECQL2 not classified & original description: CDS=95-2653 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.28 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre12.g490150 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
LOC_Os07g48360.1 MED34, ATRECQ2,... Mediator of RNA polymerase II transcription subunit 34... 0.07 OrthoFinder output from all 47 species
Len_g20646 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10429752g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp2g02390.1 MED34, ATRECQ2, RECQL2 Mediator of RNA polymerase II transcription subunit 34... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014366 MED34, ATRECQ2, RECQL2 not classified & original description: CDS=173-2734 0.03 OrthoFinder output from all 47 species
Sam_g16336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035873_P003 MED34, ATRECQ2,... ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0043138 3'-5' DNA helicase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 16 175
IPR018982 RQC_domain 403 501
IPR001650 Helicase_C 220 322
IPR002121 HRDC_dom 553 619
IPR032284 RecQ_Zn-bd 342 396
IPR029491 Helicase_HTH 659 755
No external refs found!