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  5. Ceric.17G067800.1

Ceric.17G067800.1 (HIS1-3, Ceric.17G067800)


Aliases : HIS1-3, Ceric.17G067800

Description : linker histone *(H1) & original description: pacid=50618642 polypeptide=Ceric.17G067800.1.p locus=Ceric.17G067800 ID=Ceric.17G067800.1.v2.1 annot-version=v2.1


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.17G067800.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.05 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.09 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g00585 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02276 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.07 OrthoFinder output from all 47 species
Gb_03348 HIS1-3 linker histone (H1) 0.05 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.07 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.06 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.06 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.07 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.06 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.08 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.06 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 37 100
No external refs found!