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  5. Ceric.17G037900.1

Ceric.17G037900.1 (At-SCL30A, SCL30A,...)


Aliases : At-SCL30A, SCL30A, Ceric.17G037900

Description : RNA splicing factor *(SCL28/30/33) & original description: pacid=50618449 polypeptide=Ceric.17G037900.1.p locus=Ceric.17G037900 ID=Ceric.17G037900.1.v2.1 annot-version=v2.1


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.17G037900.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g014842 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38569 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cre01.g038650 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Cre13.g586916 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g35644 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03569 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_06441 At-SCL30A, SCL30A no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15310.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Lfl_g10747 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.05 OrthoFinder output from all 47 species
Mp4g01880.1 At-SCL30A, SCL30A SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e002967_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 106
No external refs found!