Ceric.16G041600.1 (Ceric.16G041600)

Aliases : Ceric.16G041600

Description : crosslink repair helicase *(HRQ1) & original description: pacid=50588985 polypeptide=Ceric.16G041600.1.p locus=Ceric.16G041600 ID=Ceric.16G041600.1.v2.1 annot-version=v2.1

Gene families : OG0004571 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004571_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.16G041600.1
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
Aev_g28559	No alias	crosslink repair helicase *(HRQ1) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g50401	No alias	crosslink repair helicase *(HRQ1) & original description: none	0.05	OrthoFinder output from all 47 species
Gb_36557	No alias	crosslink repair helicase (HRQ1)	0.07	OrthoFinder output from all 47 species
LOC_Os07g41564.1	LOC_Os07g41564	crosslink repair helicase (HRQ1)	0.03	OrthoFinder output from all 47 species
MA_10437225g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Ppi_g14242	No alias	crosslink repair helicase *(HRQ1) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g20572	No alias	crosslink repair helicase *(HRQ1) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e035515_P001	Zm00001e035515	crosslink repair helicase (HRQ1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0032039	integrator complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	509	679
IPR001650	Helicase_C	759	870
IPR018973	MZB	1147	1229

External Links

No external refs found!

Ceric.16G041600.1 (Ceric.16G041600)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation