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  5. Ceric.15G047300.1

Ceric.15G047300.1 (CHR01, CHR1, CHA1,...)


Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1, Ceric.15G047300

Description : chromatin remodeling factor *(DDM1) & original description: pacid=50640651 polypeptide=Ceric.15G047300.1.p locus=Ceric.15G047300 ID=Ceric.15G047300.1.v2.1 annot-version=v2.1


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.15G047300.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Adi_g093200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Cre09.g390000 CHR17 RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
Msp_g15462 No alias chromatin remodeling factor *(ALC1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo102849 ATCHR12 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 239 524
IPR001650 Helicase_C 547 660
No external refs found!