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  5. Ceric.14G085100.1

Ceric.14G085100.1 (NAF1, ATNAF1, Ceric.14G085100)


Aliases : NAF1, ATNAF1, Ceric.14G085100

Description : non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex & original description: pacid=50633570 polypeptide=Ceric.14G085100.1.p locus=Ceric.14G085100 ID=Ceric.14G085100.1.v2.1 annot-version=v2.1


Gene families : OG0004285 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.14G085100.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263450 NAF1, ATNAF1,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 OrthoFinder output from all 47 species
AT1G03530 NAF1, ATNAF1 nuclear assembly factor 1 0.07 OrthoFinder output from all 47 species
Als_g21824 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Cba_g23307 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Dac_g33434 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Dcu_g41888 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Ehy_g21276 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01030569001 NAF1, ATNAF1 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
Gb_27768 NAF1, ATNAF1 non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.05 OrthoFinder output from all 47 species
Lfl_g04940 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Sam_g11615 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Solyc07g054460.4.1 NAF1, ATNAF1,... non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.03 OrthoFinder output from all 47 species
Zm00001e032062_P001 NAF1, ATNAF1,... non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 435 519
No external refs found!