Solyc07g008880.3.1 (Solyc07g008880.3)


Aliases : Solyc07g008880.3

Description : 27.1.1 RNA.processing.splicing a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. ABNORMAL SUSPENSOR 2 (SUS2)


Gene families : OG_01_0005178 (Gene family) Phylogenetic Tree(s): OG0005178_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc07g008880.3.1
Cluster HCCA cluster: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.16 Gene family
Cpa|evm.model.tig00000093.137 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.08 Gene family
Cre01.g016050 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.02 Gene family
GSVIVT01017346001 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.14 Gene family
LOC_Os05g07050 Os05g0163200,... 27.1.1 RNA.processing.splicing a genetic locus involved... 0.04 Gene family
MA_7388g0020 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.11 Gene family
Smo173603 PACid_15416251 27.1.1 RNA.processing.splicing a genetic locus involved... 0.16 Gene family
Zm00001d036301 GRMZM2G433801 27.1.1 RNA.processing.splicing a genetic locus involved... 0.09 Gene family
Zm00001d045199 GRMZM2G099355 27.1.1 RNA.processing.splicing a genetic locus involved... 0.17 Gene family

Type GO Term Name Evidence Source
MF GO:0017070 U6 snRNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012591 PRO8NT 107 258
IPR019582 RRM_spliceosomal_PrP8 1034 1124
IPR012592 PROCN 444 849
IPR000555 JAMM/MPN+_dom 2150 2248
IPR019581 Prp8_U5-snRNA-bd 1259 1392
IPR012984 PROCT 2261 2381
IPR019580 Prp8_U6-snRNA-bd 1491 1649
IPR021983 PRP8_domainIV 1809 2038
No external refs found!