Ceric.12G046200.1 (ATRAD54, CHR25,...)

Aliases : ATRAD54, CHR25, RAD54, Ceric.12G046200

Description : chromatin remodeling factor *(RAD54) & original description: pacid=50600518 polypeptide=Ceric.12G046200.1.p locus=Ceric.12G046200 ID=Ceric.12G046200.1.v2.1 annot-version=v2.1

Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.12G046200.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G19210	ATRAD54, CHR25, RAD54	homolog of RAD54	0.04	OrthoFinder output from all 47 species
Aop_g61901	ATRAD54, CHR25, RAD54	chromatin remodeling factor *(RAD54) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020614.39	ATRAD54, CHR25, RAD54	Chromatin organisation.chromatin remodeling...	0.1	OrthoFinder output from all 47 species
Cre03.g189000	ATRAD54, CHR25, RAD54	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Cre10.g430950	ATRAD54, CHR25, RAD54	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Dcu_g39643	ATRAD54, CHR25, RAD54	chromatin remodeling factor *(RAD54) & original description: none	0.11	OrthoFinder output from all 47 species
GSVIVT01031756001	ATRAD54, CHR25, RAD54	Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_22245	ATRAD54, CHR25, RAD54	DNA repair and recombination protein RAD54 OS=Oryza...	0.12	OrthoFinder output from all 47 species
LOC_Os02g52510.1	ATRAD54, CHR25,...	chromatin remodeling factor (Rad54)	0.11	OrthoFinder output from all 47 species
Len_g24635	ATRAD54, CHR25, RAD54	chromatin remodeling factor *(RAD54) & original description: none	0.05	OrthoFinder output from all 47 species
Mp6g06120.1	ATRAD54, CHR25, RAD54	chromatin remodeling factor (Rad54)	0.15	OrthoFinder output from all 47 species
Solyc04g056410.3.1	ATRAD54, CHR25,...	chromatin remodeling factor (Rad54)	0.15	OrthoFinder output from all 47 species
Spa_g37488	ATRAD54, CHR25, RAD54	chromatin remodeling factor *(RAD54) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g49299	ATRAD54, CHR25, RAD54	chromatin remodeling factor *(RAD54) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g45162	ATRAD54, CHR25, RAD54	chromaTin remodeling factor *(RAD54) & original description: none	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	389	696
IPR001650	Helicase_C	744	860

External Links

No external refs found!

Ceric.12G046200.1 (ATRAD54, CHR25,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation