Solyc07g008540.3.1 (Solyc07g008540.3)


Aliases : Solyc07g008540.3

Description : 27.3.34 RNA.regulation of transcription.Orphan family Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. chloroplast import apparatus 2 (CIA2) BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1) Has 102


Gene families : OG_01_0000267 (Gene family) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc07g008540.3.1
Cluster HCCA cluster: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010855001 No alias 27.3.34 RNA.regulation of transcription.Orphan family... 0.06 Gene family
MA_54929g0010 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.02 Gene family
Zm00001d015268 GRMZM2G062885 35.2 not assigned.unknown chloroplast import apparatus... 0.09 Gene family
Zm00001d053880 GRMZM2G155370 27.3.34 RNA.regulation of transcription.Orphan family... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010402 CCT_domain 381 423
No external refs found!