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  5. Ceric.11G055700.1

Ceric.11G055700.1 (CLO, GFA1, MEE5,...)


Aliases : CLO, GFA1, MEE5, Ceric.11G055700

Description : component *(CLO/SNU114/MAC11) of MAC spliceosome-associated complex & original description: pacid=50595900 polypeptide=Ceric.11G055700.1.p locus=Ceric.11G055700 ID=Ceric.11G055700.1.v2.1 annot-version=v2.1


Gene families : OG0005717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.11G055700.1

Target Alias Description ECC score Gene Family Method Actions
AT1G06220 CLO, GFA1, MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein 0.03 OrthoFinder output from all 47 species
Ala_g13456 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Als_g01183 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Aop_g09606 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.68 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.69 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Cre17.g737250 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dcu_g06490 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.07 OrthoFinder output from all 47 species
Ehy_g20814 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
GSVIVT01012881001 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Gb_08962 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
LOC_Os06g40600.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.06 OrthoFinder output from all 47 species
MA_10434191g0010 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.02 OrthoFinder output from all 47 species
MA_931263g0010 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Mp8g11140.1 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Pir_g10447 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Sam_g30419 No alias component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Solyc07g007210.3.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.1 OrthoFinder output from all 47 species
Spa_g01974 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e037442_P001 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR031950 EFTUD2_N 3 124
IPR004161 EFTu-like_2 514 588
IPR000795 T_Tr_GTP-bd_dom 147 351
IPR005517 Transl_elong_EFG/EF2_IV 729 845
IPR000640 EFG_V-like 848 936
No external refs found!