Ceric.10G083400.1 (Ceric.10G083400)

Aliases : Ceric.10G083400

Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: pacid=50613308 polypeptide=Ceric.10G083400.1.p locus=Ceric.10G083400 ID=Ceric.10G083400.1.v2.1 annot-version=v2.1

Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.10G083400.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G64510	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.03	OrthoFinder output from all 47 species
Als_g09083	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031290	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g26011	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dcu_g40728	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Dde_g06729	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dde_g06910	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g04427	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
LOC_Os03g62630.1	LOC_Os03g62630	component psRPS6 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Len_g38836	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10429326g0010	No alias	component psRPS6 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Msp_g00928	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g25871	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g00320	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Spa_g37875	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	113	210

External Links

No external refs found!

Ceric.10G083400.1 (Ceric.10G083400)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation