1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.09G048000.1

Ceric.09G048000.1 (RPS4, Ceric.09G048000)


Aliases : RPS4, Ceric.09G048000

Description : component *(uS4c) of small plastid ribosomal-subunit proteome & original description: pacid=50588485 polypeptide=Ceric.09G048000.1.p locus=Ceric.09G048000 ID=Ceric.09G048000.1.v2.1 annot-version=v2.1


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.09G048000.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.32 OrthoFinder output from all 47 species
Aev_g09926 No alias not classified & original description: none 0.23 OrthoFinder output from all 47 species
Aev_g45669 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g03663 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
Aop_g38513 RPS4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77949 RPS4 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Ceric.33G023900.1 RPS4, Ceric.33G023900 component *(uS4c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
Gb_11360 RPS4 component psRPS4 of small ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.28 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.28 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.28 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.2 OrthoFinder output from all 47 species
Ore_g23778 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Solyc00g500212.1.1 RPS4, Solyc00g500212 component psRPS4 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Solyc09g015330.2.1 Solyc09g015330 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g022620.1.1 Solyc11g022620 30S ribosomal protein S4, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Spa_g55822 RPS4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e003895_P001 RPS4, Zm00001e003895 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e003908_P001 RPS4, Zm00001e003908 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e013560_P001 RPS4, Zm00001e013560 component psRPS4 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042033_P001 RPS4, Zm00001e042033 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e042054_P001 RPS4, Zm00001e042054 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e042078_P001 RPS4, Zm00001e042078 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e042098_P001 RPS4, Zm00001e042098 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e042353_P001 RPS4, Zm00001e042353 component psRPS4 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 31 81
IPR002942 S4_RNA-bd 82 129
No external refs found!