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Aliases : Ceric.09G042200
Description : component *(U1C) of U1 snRNP complex & original description: pacid=50587375 polypeptide=Ceric.09G042200.1.p locus=Ceric.09G042200 ID=Ceric.09G042200.1.v2.1 annot-version=v2.1
Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020553.55 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g47964 | No alias | component *(U1C) of U1 snRNP complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41077 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g16640.1 | LOC_Os02g16640 | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g05150.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g02748 | No alias | component *(U1C) of U1 snRNP complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g07711 | No alias | component *(U1C) of U1 snRNP complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g067830.3.1 | Solyc01g067830 | component U1C of U1 small nuclear ribonucleoprotein... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g008860.3.1 | Solyc06g008860 | component U1C of U1 small nuclear ribonucleoprotein... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |