Ceric.09G005400.1 (CHA18, CHR18, Ceric.09G005400)

Aliases : CHA18, CHR18, Ceric.09G005400

Description : chromatin remodeling factor *(SMARCAL1) & original description: pacid=50586750 polypeptide=Ceric.09G005400.1.p locus=Ceric.09G005400 ID=Ceric.09G005400.1.v2.1 annot-version=v2.1

Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.09G005400.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Adi_g021948	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Aop_g00780	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene71045.t1	CHA18, CHR18,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cre12.g494200	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dde_g00939	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os07g44210.1	CHA18, CHR18,...	chromatin remodeling factor (SMARCAL1)	0.05	OrthoFinder output from all 47 species
Pir_g45727	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.04	OrthoFinder output from all 47 species
Ppi_g41946	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e035658_P002	CHA18, CHR18,...	chromatin remodeling factor (SMARCAL1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	417	653
IPR001650	Helicase_C	709	808

External Links

No external refs found!

Ceric.09G005400.1 (CHA18, CHR18, Ceric.09G005400)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation