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  5. Ceric.08G063500.1

Ceric.08G063500.1 (Ceric.08G063500)


Aliases : Ceric.08G063500

Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: pacid=50638849 polypeptide=Ceric.08G063500.1.p locus=Ceric.08G063500 ID=Ceric.08G063500.1.v2.1 annot-version=v2.1


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.08G063500.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00140350 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.11 OrthoFinder output from all 47 species
Adi_g087186 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Ala_g09749 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.07 OrthoFinder output from all 47 species
Als_g59791 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.07 OrthoFinder output from all 47 species
Aop_g29510 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Azfi_s0682.g082025 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001278.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Cre02.g143600 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Dcu_g05843 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.07 OrthoFinder output from all 47 species
Dde_g50320 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
GSVIVT01017853001 No alias RNA processing.messenger ribonucleoprotein particle... 0.13 OrthoFinder output from all 47 species
Gb_02851 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os07g45160.1 LOC_Os07g45160 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species
Len_g12762 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
MA_10433322g0010 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species
Msp_g14371 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Nbi_g10133 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Pnu_g17329 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Ppi_g14323 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002239 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Sam_g04649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19237 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Sam_g50982 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Smo438035 No alias RNA processing.messenger ribonucleoprotein particle... 0.05 OrthoFinder output from all 47 species
Smo81057 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Solyc12g035670.3.1 Solyc12g035670 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.09 OrthoFinder output from all 47 species
Spa_g21576 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 287 580
No external refs found!