Solyc07g005030.3.1 (Solyc07g005030.3)


Aliases : Solyc07g005030.3

Description : 27.1.20 RNA.processing.degradation dicer Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. dicer-like 4 (DCL4)


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc07g005030.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 Gene family
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.02 Gene family
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.08 Gene family
Cre07.g345900 No alias No description available 0.05 Gene family
GSVIVT01001045001 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.04 Gene family
MA_10432726g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Smo74321 PACid_15409014 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Smo86110 PACid_15420555 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Zm00001d027412 GRMZM2G040762 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 457 562
IPR000999 RNase_III_dom 1080 1210
IPR000999 RNase_III_dom 1286 1395
IPR006935 Helicase/UvrB_N 57 242
IPR005034 Dicer_dimerisation_dom 628 713
No external refs found!