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  5. Ceric.08G003300.1

Ceric.08G003300.1 (Ceric.08G003300)


Aliases : Ceric.08G003300

Description : not classified & original description: pacid=50638706 polypeptide=Ceric.08G003300.1.p locus=Ceric.08G003300 ID=Ceric.08G003300.1.v2.1 annot-version=v2.1


Gene families : OG0001264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.08G003300.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g025138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24699 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g02986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16443 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21421 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g24124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21162 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g09255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12924 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g21807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37614 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g38524 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g65712 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.09G067900.1 Ceric.09G067900 not classified & original description: pacid=50588290... 0.08 OrthoFinder output from all 47 species
Ceric.12G065400.1 Ceric.12G065400 not classified & original description: pacid=50601520... 0.06 OrthoFinder output from all 47 species
Ceric.1Z218900.1 Ceric.1Z218900 not classified & original description: pacid=50637330... 0.08 OrthoFinder output from all 47 species
Dac_g16960 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g05901 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g21299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13989 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g15861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09695 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g09926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46611 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0295.g027183 No alias not classified & original description: CDS=1-1983 0.05 OrthoFinder output from all 47 species
Spa_g07310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08432 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g15426 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g01169 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g02050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08689 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09598 No alias PIP/PIPL precursor polypeptide & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 703 735
IPR002885 Pentatricopeptide_repeat 394 424
IPR002885 Pentatricopeptide_repeat 464 490
IPR002885 Pentatricopeptide_repeat 570 599
IPR002885 Pentatricopeptide_repeat 745 774
IPR002885 Pentatricopeptide_repeat 606 633
IPR002885 Pentatricopeptide_repeat 636 685
IPR002885 Pentatricopeptide_repeat 328 377
No external refs found!