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  5. Ceric.07G100400.1

Ceric.07G100400.1 (PTB2, ATPTB2, Ceric.07G100400)


Aliases : PTB2, ATPTB2, Ceric.07G100400

Description : RNA splicing factor *(PTB) & original description: pacid=50626753 polypeptide=Ceric.07G100400.1.p locus=Ceric.07G100400 ID=Ceric.07G100400.1.v2.1 annot-version=v2.1


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.07G100400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00143110 PTB2, ATPTB2,... RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Cba_g24087 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g56769 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38746 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02547 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07274 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12473 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29798 No alias RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36099 No alias RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g42035 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 22 72
IPR021790 PTBP1-like_RRM2 243 320
No external refs found!