Solyc06g084090.3.1 (Solyc06g084090.3)


Aliases : Solyc06g084090.3

Description : 28.1.3.2.1 DNA.synthesis/chromatin structure.histone.core.H2A Encodes HTA11, a histone H2A protein. histone H2A 11 (HTA11)


Gene families : OG_01_0001029 (Gene family) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g084090.3.1
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT3G54560 HTA11 histone H2A 11 0.11 Gene family
Cpa|evm.model.tig00021108.27 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
Cre13.g567700 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
GSVIVT01003139001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.08 Gene family
GSVIVT01017218001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
LOC_Os03g06670 Os03g0162200 28.1.3.2.1 DNA.synthesis/chromatin... 0.09 Gene family
LOC_Os10g28230 Os10g0418000 28.1.3.2.1 DNA.synthesis/chromatin... 0.06 Gene family
MA_100300g0010 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d013300 GRMZM2G050833 28.1.3.2.1 DNA.synthesis/chromatin... 0.05 Gene family
Zm00001d027760 GRMZM2G056231 28.1.3.2.1 DNA.synthesis/chromatin... 0.09 Gene family
Zm00001d027775 GRMZM2G181497 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d033979 GRMZM2G149775 28.1.3.2.1 DNA.synthesis/chromatin... 0.05 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 16 106
IPR032454 Histone_H2A_C 107 136
No external refs found!