Solyc06g083870.3.1 (Solyc06g083870.3)

Aliases : Solyc06g083870.3

Description : 31.2 cell.division Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment. TITAN8 (TTN8)

Gene families : OG_01_0006182 (Gene family) Phylogenetic Tree(s): OG0006182_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc06g083870.3.1
Cluster	HCCA cluster: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AT3G54670	TTN8, ATSMC1, SMC1	Structural maintenance of chromosomes (SMC) family protein	0.08	Gene family
Cre15.g635800	No alias	31.2 cell.division Encodes a member of the Arabidopsis...	0.01	Gene family
GSVIVT01028343001	No alias	31.2 cell.division Encodes a member of the Arabidopsis...	0.08	Gene family
LOC_Os12g44390	Os12g0641500	31.2 cell.division Encodes a member of the Arabidopsis...	0.05	Gene family
Smo236008	PACid_15405844	31.2 cell.division Encodes a member of the Arabidopsis...	0.03	Gene family
Zm00001d031847	GRMZM2G416069,...	31.2 cell.division Encodes a member of the Arabidopsis...	0.12	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan
MF	GO:0005524	ATP binding	IEA	InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	InterProScan
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051276	chromosome organization	IEA	InterProScan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	517	632
IPR003395	RecF/RecN/SMC_N	10	1199

External Links

No external refs found!

Solyc06g083870.3.1 (Solyc06g083870.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation