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  5. Ceric.07G019600.1

Ceric.07G019600.1 (XRN3, AtXRN3, Ceric.07G019600)


Aliases : XRN3, AtXRN3, Ceric.07G019600

Description : not classified & original description: pacid=50626131 polypeptide=Ceric.07G019600.1.p locus=Ceric.07G019600 ID=Ceric.07G019600.1.v2.1 annot-version=v2.1


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.07G019600.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00204p00040220 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00423p00011960 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s03991p00001150 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Aop_g68931 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s1105.g097651 XRN3, AtXRN3 not classified & original description: CDS=92-973 0.07 OrthoFinder output from all 47 species
Ceric.28G035400.1 XRN3, AtXRN3,... not classified & original description: pacid=50569866... 0.06 OrthoFinder output from all 47 species
Msp_g19695 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05475 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03203 XRN2, AtXRN2 not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 92
IPR001878 Znf_CCHC 102 115
No external refs found!