Solyc06g082360.3.1 (Solyc06g082360.3)


Aliases : Solyc06g082360.3

Description : 27.1.1 RNA.processing.splicing encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. U2 small nuclear ribonucleoprotein B (U2B'')


Gene families : OG_01_0002325 (Gene family) Phylogenetic Tree(s): OG0002325_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g082360.3.1
Cluster HCCA cluster: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.87 No alias 27.1.1 RNA.processing.splicing encodes U2B", which is a... 0.02 Gene family
Cpa|evm.model.tig00021537.24 No alias 27.1.1 RNA.processing.splicing encodes U2B", which is a... 0.02 Gene family
Cre13.g566700 No alias No description available 0.02 Gene family
LOC_Os03g18720 Os03g0298800 27.1.1 RNA.processing.splicing encodes U2B", which is a... 0.02 Gene family
Smo409510 PACid_15403083 27.1.1 RNA.processing.splicing encodes U2B", which is a... 0.03 Gene family
Zm00001d037602 GRMZM2G018020 27.1.1 RNA.processing.splicing encodes spliceosomal... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 13 83
IPR000504 RRM_dom 161 220
No external refs found!