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  5. Ceric.05G088400.1

Ceric.05G088400.1 (Ceric.05G088400)


Aliases : Ceric.05G088400

Description : scaffold nucleoporin of nuclear pore complex *(NUP75/85) & original description: pacid=50577461 polypeptide=Ceric.05G088400.1.p locus=Ceric.05G088400 ID=Ceric.05G088400.1.v2.1 annot-version=v2.1


Gene families : OG0004258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G088400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00051320 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
AT4G32910 No alias CONTAINS InterPro DOMAIN/s: Nuclear pore complex... 0.03 OrthoFinder output from all 47 species
Ala_g02003 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.04 OrthoFinder output from all 47 species
Als_g02552 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025285 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Cre08.g383650 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01035621001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g54240.1 LOC_Os01g54240 NUP75/85 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Mp1g11600.1 No alias NUP75/85 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Nbi_g36579 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Ore_g22939 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.06 OrthoFinder output from all 47 species
Sam_g52336 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.03 OrthoFinder output from all 47 species
Solyc08g066580.4.1 Solyc08g066580 NUP75/85 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Tin_g06661 No alias scaffold nucleoporin of nuclear pore complex *(NUP75/85)... 0.05 OrthoFinder output from all 47 species
Zm00001e019793_P001 Zm00001e019793 NUP75/85 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR011502 Nucleoporin_Nup85 63 665
No external refs found!