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  5. Ceric.05G057900.1

Ceric.05G057900.1 (NFD2, HMG BETA 1,...)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02, Ceric.05G057900

Description : DNA bending architectural protein *(HMG-B) & original description: pacid=50577824 polypeptide=Ceric.05G057900.1.p locus=Ceric.05G057900 ID=Ceric.05G057900.1.v2.1 annot-version=v2.1


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G057900.1

Target Alias Description ECC score Gene Family Method Actions
Cre11.g480950 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
Len_g16155 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Msp_g42589 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g29699 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Ore_g09268 NFD2, HMG BETA... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Spa_g11610 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Tin_g44303 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e010305_P004 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 121 190
No external refs found!