Ceric.05G048500.1 (RPL2.1, Ceric.05G048500)

Aliases : RPL2.1, Ceric.05G048500

Description : component *(uL2c) of large plastid ribosomal-subunit proteome & original description: pacid=50578016 polypeptide=Ceric.05G048500.1.p locus=Ceric.05G048500 ID=Ceric.05G048500.1.v2.1 annot-version=v2.1

Gene families : OG0002194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.05G048500.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00830	RPL2.1	ribosomal protein L2	0.12	OrthoFinder output from all 47 species
ATCG01310	RPL2.2	ribosomal protein L2	0.12	OrthoFinder output from all 47 species
Aev_g14432	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Aev_g24286	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Ala_g18429	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ala_g38158	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g02244	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Als_g02447	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aob_g13898	RPL2.1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g03784	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cba_g04596	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.38G009500.1	RPL2.1, Ceric.38G009500	not classified & original description: pacid=50580350...	0.12	OrthoFinder output from all 47 species
Gb_17475	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.06	OrthoFinder output from all 47 species
Gb_20139	RPL2.1	component psRPS11 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Gb_24024	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.06	OrthoFinder output from all 47 species
Gb_25047	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.06	OrthoFinder output from all 47 species
Gb_37512	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.04	OrthoFinder output from all 47 species
Lfl_g13189	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Mp1g19370.1	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Nbi_g04996	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Nbi_g39693	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ore_g43250	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Pir_g37334	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Smo137825	RPL2.1	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
Solyc00g500035.1.1	RPL2.1, Solyc00g500035	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.08	OrthoFinder output from all 47 species
Solyc00g500036.1.1	RPL2.1, Solyc00g500036	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc00g500047.1.1	RPL2.1, Solyc00g500047	50S ribosomal protein L2, chloroplastic OS=Solanum...	0.09	OrthoFinder output from all 47 species
Solyc00g500079.1.1	RPL2.1, Solyc00g500079	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.08	OrthoFinder output from all 47 species
Solyc00g500080.1.1	RPL2.1, Solyc00g500080	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc00g500152.1.1	RPL2.1, Solyc00g500152	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.06	OrthoFinder output from all 47 species
Solyc00g500297.1.1	RPL2.1, Solyc00g500297	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.08	OrthoFinder output from all 47 species
Solyc00g500298.1.1	RPL2.1, Solyc00g500298	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc02g150102.1.1	RPL2.1, Solyc02g150102	50S ribosomal protein L2, chloroplastic OS=Aethionema...	0.03	OrthoFinder output from all 47 species
Solyc09g050067.1.1	RPL2.1, Solyc09g050067	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.05	OrthoFinder output from all 47 species
Zm00001e042445_P001	RPL2.1, Zm00001e042445	50S ribosomal protein L2, chloroplastic OS=Sorghum...	0.02	OrthoFinder output from all 47 species
Zm00001e042446_P001	RPL2.1, Zm00001e042446	50S ribosomal protein L2, chloroplastic OS=Sorghum...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0031647	regulation of protein stability	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0042301	phosphate ion binding	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0050821	protein stabilization	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022666	Rbsml_prot_L2_RNA-bd_dom	40	115
IPR022669	Ribosomal_L2_C	124	248

External Links

No external refs found!

Ceric.05G048500.1 (RPL2.1, Ceric.05G048500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation