Ceric.04G106800.1 (CARB, Ceric.04G106800)

Aliases : CARB, Ceric.04G106800

Description : EC_6.3 ligase forming carbon-nitrogen bond & original description: pacid=50631400 polypeptide=Ceric.04G106800.1.p locus=Ceric.04G106800 ID=Ceric.04G106800.1.v2.1 annot-version=v2.1

Gene families : OG0004410 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004410_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.04G106800.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G29900	CARB	carbamoyl phosphate synthetase B	0.05	OrthoFinder output from all 47 species
Aev_g12881	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0074.g037310	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021319.3	CARB	Nucleotide metabolism.pyrimidines.ribonucleotide...	0.04	OrthoFinder output from all 47 species
Dac_g07374	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.04	OrthoFinder output from all 47 species
Dcu_g07166	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
MA_131880g0010	CARB	Carbamoyl-phosphate synthase large chain, chloroplastic...	0.02	OrthoFinder output from all 47 species
Ore_g08638	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Pir_g17083	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Spa_g08428	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Spa_g52602	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.03	OrthoFinder output from all 47 species
Tin_g03545	CARB	EC_6.3 ligase forming carbon-nitrogen bond & original...	0.05	OrthoFinder output from all 47 species
Zm00001e020486_P001	CARB, Zm00001e020486	large subunit of carbamoyl phosphate synthetase...	0.03	OrthoFinder output from all 47 species
Zm00001e027763_P001	CARB, Zm00001e027763	large subunit of carbamoyl phosphate synthetase...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	813	1015
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	255	461
IPR011607	MGS-like_dom	1098	1184
IPR005480	CarbamoylP_synth_lsu_oligo	554	631

External Links

No external refs found!

Ceric.04G106800.1 (CARB, Ceric.04G106800)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation