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  5. Ceric.04G052100.1

Ceric.04G052100.1 (Ceric.04G052100)


Aliases : Ceric.04G052100

Description : regulatory component *(RPT4) of 26S proteasome & original description: pacid=50632121 polypeptide=Ceric.04G052100.1.p locus=Ceric.04G052100 ID=Ceric.04G052100.1.v2.1 annot-version=v2.1


Gene families : OG0004670 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.04G052100.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g060305 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Als_g09965 No alias regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000718.6 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Cre17.g710150 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Gb_31524 No alias regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os02g10640.1 LOC_Os02g10640 regulatory component RPT4 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Mp7g14270.1 No alias regulatory component RPT4 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Sam_g07453 No alias regulatory component *(RPT4) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Solyc01g109940.3.1 Solyc01g109940 regulatory component RPT4 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Tin_g16778 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e014032_P001 Zm00001e014032 regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e037434_P001 RPT4A, Zm00001e037434 regulatory component RPT4 of 26S proteasome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 331 373
IPR032501 Prot_ATP_ID_OB_C 62 117
IPR003959 ATPase_AAA_core 175 308
No external refs found!