Solyc06g075150.3.1 (Solyc06g075150.3)


Aliases : Solyc06g075150.3

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. auxin response factor 16 (ARF16)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g075150.3.1
Cluster HCCA cluster: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT1G59750 ARF1 auxin response factor 1 0.03 Gene family
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 Gene family
LOC_Os02g41800 Os02g0628600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
LOC_Os04g56850 Os04g0664400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Smo181406 PACid_15416095 No description available 0.01 Gene family
Smo424113 PACid_15422080 No description available 0.03 Gene family
Zm00001d001879 GRMZM2G078274 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d011953 GRMZM2G116557 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d026590 GRMZM2G475882 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family
Zm00001d041497 GRMZM2G073750 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 103 203
IPR010525 Auxin_resp 263 345
No external refs found!