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  5. Ceric.03G053800.1

Ceric.03G053800.1 (ATRAD18, SMC6B, MIM,...)


Aliases : ATRAD18, SMC6B, MIM, Ceric.03G053800

Description : component *(SMC6) of homologous recombination repair Smc5-Smc6 complex & original description: pacid=50572152 polypeptide=Ceric.03G053800.1.p locus=Ceric.03G053800 ID=Ceric.03G053800.1.v2.1 annot-version=v2.1


Gene families : OG0004807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.03G053800.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00113730 ATRAD18, SMC6B,... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
AT5G07660 SMC6A structural maintenance of chromosomes 6A 0.04 OrthoFinder output from all 47 species
AT5G61460 ATRAD18, SMC6B, MIM P-loop containing nucleoside triphosphate hydrolases... 0.1 OrthoFinder output from all 47 species
Adi_g081122 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Ala_g08493 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.07 OrthoFinder output from all 47 species
Als_g11694 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.09 OrthoFinder output from all 47 species
Aob_g11379 SMC6A component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Aspi01Gene38317.t1 ATRAD18, SMC6B,... component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38319.t1 SMC6A, Aspi01Gene38319 component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Dcu_g09369 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.06 OrthoFinder output from all 47 species
Gb_31282 ATRAD18, SMC6B, MIM component SMC6 of homologous recombination repair... 0.05 OrthoFinder output from all 47 species
Lfl_g02370 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.07 OrthoFinder output from all 47 species
MA_9752383g0010 SMC6A Structural maintenance of chromosomes protein 6B... 0.04 OrthoFinder output from all 47 species
Msp_g24079 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Ore_g08000 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.08 OrthoFinder output from all 47 species
Sam_g36733 No alias component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Solyc05g051680.4.1 ATRAD18, SMC6B,... component SMC6 of homologous recombination repair... 0.05 OrthoFinder output from all 47 species
Spa_g04441 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Tin_g39944 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Zm00001e033734_P001 ATRAD18, SMC6B,... component SMC6 of homologous recombination repair... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!