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  5. Ceric.03G039000.1

Ceric.03G039000.1 (SE, Ceric.03G039000)


Aliases : SE, Ceric.03G039000

Description : component *(SERRATE) of DCL1-HYL1 miRNA biogenesis complex & original description: pacid=50572786 polypeptide=Ceric.03G039000.1.p locus=Ceric.03G039000 ID=Ceric.03G039000.1.v2.1 annot-version=v2.1


Gene families : OG0003096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.03G039000.1

Target Alias Description ECC score Gene Family Method Actions
AT2G27100 SE C2H2 zinc-finger protein SERRATE (SE) 0.02 OrthoFinder output from all 47 species
Adi_g061118 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Adi_g087436 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Aev_g09208 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Ala_g05956 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Aob_g02258 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001214.5 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre13.g575900 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Dcu_g14201 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Dde_g10898 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Ehy_g08633 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
GSVIVT01027348001 SE RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Gb_37971 SE C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
LOC_Os06g48530.1 SE, LOC_Os06g48530 C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40560.1 SE, LOC_Os08g40560 C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Len_g10116 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Lfl_g02072 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
MA_10426519g0010 SE C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Mp1g23090.1 SE C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Ore_g06846 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Ore_g36418 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Pir_g04707 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Ppi_g62657 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s3319.g028716 SE not classified & original description: CDS=1-597 0.03 OrthoFinder output from all 47 species
Sam_g16645 No alias component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Solyc01g009090.3.1 SE, Solyc01g009090 C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Spa_g48512 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Spa_g54768 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Tin_g09411 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021933 SERRATE/Ars2_N 179 260
IPR007042 SERRATE/Ars2_C 416 636
No external refs found!