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  5. Ceric.03G034300.1

Ceric.03G034300.1 (smB, Ceric.03G034300)


Aliases : smB, Ceric.03G034300

Description : component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: pacid=50572564 polypeptide=Ceric.03G034300.1.p locus=Ceric.03G034300 ID=Ceric.03G034300.1.v2.1 annot-version=v2.1


Gene families : OG0007641 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.03G034300.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0272.g061251 No alias component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Cre14.g611150 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
LOC_Os07g07220.1 smB, LOC_Os07g07220 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Solyc01g094540.4.1 smB, Solyc01g094540 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Solyc05g049950.3.1 smB, Solyc05g049950 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Zm00001e011476_P001 Zm00001e011476 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Zm00001e032884_P001 Zm00001e032884 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 8 82
No external refs found!