Aev_g48839


Description : not classified & original description: none


Gene families : OG0002837 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002837_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g48839
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
AT2G27980 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.06 OrthoFinder output from all 47 species
Ceric.36G048800.1 Ceric.36G048800 not classified & original description: pacid=50568689... 0.05 OrthoFinder output from all 47 species
Ceric.36G053700.1 Ceric.36G053700 not classified & original description: pacid=50569216... 0.04 OrthoFinder output from all 47 species
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Dcu_g12142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033711001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Mp2g04330.1 No alias PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Pir_g47833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g083800.2.1 Solyc10g083800 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc10g084650.3.1 Solyc10g084650 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc11g066480.2.1 Solyc11g066480 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e029784_P001 Zm00001e029784 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 976 1017
IPR032308 TDBD 718 771
IPR032308 TDBD 901 950
No external refs found!