Ceric.02G103500.1 (SNL3, ATSIN3, SIN3,...)

Aliases : SNL3, ATSIN3, SIN3, Ceric.02G103500

Description : component *(SNL) of histone deacetylase machineries & original description: pacid=50584328 polypeptide=Ceric.02G103500.1.p locus=Ceric.02G103500 ID=Ceric.02G103500.1.v2.1 annot-version=v2.1

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.02G103500.1

Target	Alias	Description	ECC score	Gene Family Method
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ehy_g10036	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Lfl_g03517	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ore_g04819	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ore_g30141	SNL2	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	512	601
IPR003822	PAH	361	405
IPR003822	PAH	58	101
IPR003822	PAH	141	184

External Links

No external refs found!

Ceric.02G103500.1 (SNL3, ATSIN3, SIN3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation