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  5. Ceric.02G042300.1

Ceric.02G042300.1 (Ceric.02G042300)


Aliases : Ceric.02G042300

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: pacid=50586123 polypeptide=Ceric.02G042300.1.p locus=Ceric.02G042300 ID=Ceric.02G042300.1.v2.1 annot-version=v2.1


Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.02G042300.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
AMTR_s00046p00028310 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.19 OrthoFinder output from all 47 species
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.03 OrthoFinder output from all 47 species
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.19 OrthoFinder output from all 47 species
Adi_g014139 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Adi_g021180 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Adi_g115558 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g00374 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g17880 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Ala_g22187 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ala_g34347 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Aob_g06312 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g40420 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0268.g061080 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Cba_g17409 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.27G062600.1 Ceric.27G062600 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000551.22 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
Cre12.g514500 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Dac_g01215 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Dac_g01981 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Dac_g26585 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g05219 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g21739 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dde_g22249 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
GSVIVT01012877001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
GSVIVT01035927001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Gb_14912 EMB1080 component RPS11 of SSU proteome 0.17 OrthoFinder output from all 47 species
LOC_Os04g52361.1 EMB1080, LOC_Os04g52361 component RPS11 of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os08g10608.1 RPS11-BETA,... component RPS11 of SSU proteome 0.18 OrthoFinder output from all 47 species
Len_g04081 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
MA_19350g0010 EMB1080 component RPS11 of SSU proteome 0.1 OrthoFinder output from all 47 species
Mp4g23360.1 EMB1080 component RPS11 of SSU proteome 0.19 OrthoFinder output from all 47 species
Mp6g10500.1 EMB1080 component RPS11 of SSU proteome 0.25 OrthoFinder output from all 47 species
Msp_g22593 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Msp_g27112 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g01705 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ore_g11217 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ore_g11218 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Pp3c1_27980V3.1 EMB1080, Pp3c1_27980 Nucleic acid-binding, OB-fold-like protein 0.13 OrthoFinder output from all 47 species
Pp3c2_13690V3.1 EMB1080, Pp3c2_13690 Nucleic acid-binding, OB-fold-like protein 0.05 OrthoFinder output from all 47 species
Pp3s116_30V3.1 EMB1080, Pp3s116_30 Nucleic acid-binding, OB-fold-like protein 0.06 OrthoFinder output from all 47 species
Ppi_g53479 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017004 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g04222 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo268639 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
Solyc06g073790.3.1 Solyc06g073790 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
Solyc06g073800.3.1 Solyc06g073800 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
Solyc12g042080.2.1 Solyc12g042080 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
Spa_g08091 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Spa_g22575 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Spa_g31268 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Tin_g44672 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Zm00001e006955_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.1 OrthoFinder output from all 47 species
Zm00001e041635_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 4 72
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!