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  5. Ceric.02G040400.1

Ceric.02G040400.1 (CHR5, Ceric.02G040400)


Aliases : CHR5, Ceric.02G040400

Description : not classified & original description: pacid=50584074 polypeptide=Ceric.02G040400.1.p locus=Ceric.02G040400 ID=Ceric.02G040400.1.v2.1 annot-version=v2.1


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.02G040400.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.09 OrthoFinder output from all 47 species
AT5G18620 CHR17 chromatin remodeling factor17 0.05 OrthoFinder output from all 47 species
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.02 OrthoFinder output from all 47 species
Ala_g22712 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g01913 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g05226 CHR5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g08885 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g25745 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45824.t1 CHR5, Aspi01Gene45824 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50287.t1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007848 CHR01, CHR1,... not classified & original description: CDS=1-2349 0.06 OrthoFinder output from all 47 species
Azfi_s0754.g085337 No alias not classified & original description: CDS=1-1965 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.188 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000350.9 PKR2 CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000691.35 ATCHR12 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000983.26 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.06 OrthoFinder output from all 47 species
Cre14.g610300 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre16.g647602 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g05131 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g06996 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Dcu_g42061 CHR5 not classified & original description: none 0.2 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.15 OrthoFinder output from all 47 species
Gb_16888 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Len_g14805 CHR5 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g17063 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.18 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.06 OrthoFinder output from all 47 species
Mp1g18560.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.09 OrthoFinder output from all 47 species
Msp_g27750 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02499 CHR5 not classified & original description: none 0.13 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.18 OrthoFinder output from all 47 species
Nbi_g11799 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g12699 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g29413 CHR11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260 CHR01, CHR1,... not classified & original description: CDS=245-1573 0.06 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.1 OrthoFinder output from all 47 species
Smo102612 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
Solyc01g079690.4.1 ATCHR12, Solyc01g079690 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.09 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.08 OrthoFinder output from all 47 species
Solyc08g029130.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Spa_g10521 CHR5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.15 OrthoFinder output from all 47 species
Spa_g51134 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g11014 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.16 OrthoFinder output from all 47 species
Tin_g37141 CHR17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005517_P002 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.08 OrthoFinder output from all 47 species
Zm00001e010722_P005 ATCHR12, Zm00001e010722 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e011541_P001 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.09 OrthoFinder output from all 47 species
Zm00001e017643_P001 CHR17, Zm00001e017643 chromatin remodeling factor (Iswi) 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 749 859
IPR023780 Chromo_domain 354 385
IPR000330 SNF2_N 445 716
No external refs found!