Solyc06g072710.3.1 (Solyc06g072710.3)


Aliases : Solyc06g072710.3

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme sigma factor A (SIGA)


Gene families : OG_01_0005897 (Gene family) Phylogenetic Tree(s): OG0005897_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g072710.3.1
Cluster HCCA cluster: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT1G64860 SIGB, SIG2,... sigma factor A 0.14 Gene family
GSVIVT01024261001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
LOC_Os08g06630 Os08g0163400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Zm00001d049494 GRMZM2G543629 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 345 416
IPR007630 RNA_pol_sigma70_r4 443 491
IPR007627 RNA_pol_sigma70_r2 268 335
No external refs found!