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  5. Ceric.01G123400.1

Ceric.01G123400.1 (Ceric.01G123400)


Aliases : Ceric.01G123400

Description : not classified & original description: pacid=50591208 polypeptide=Ceric.01G123400.1.p locus=Ceric.01G123400 ID=Ceric.01G123400.1.v2.1 annot-version=v2.1


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.01G123400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036516 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G012400.1 Ceric.01G012400 not classified & original description: pacid=50592360... 0.09 OrthoFinder output from all 47 species
Dcu_g02987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Pnu_g04413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.04 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 241 267
IPR002885 Pentatricopeptide_repeat 211 231
IPR002885 Pentatricopeptide_repeat 430 488
No external refs found!