Ceric.01G068400.1 (FIB1, ATFIB1, ATFBR1,...)

Aliases : FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, Ceric.01G068400

Description : methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex & original description: pacid=50592372 polypeptide=Ceric.01G068400.1.p locus=Ceric.01G068400 ID=Ceric.01G068400.1.v2.1 annot-version=v2.1

Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.01G068400.1
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00218020	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.07	OrthoFinder output from all 47 species
AMTR_s00099p00093470	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.05	OrthoFinder output from all 47 species
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.14	OrthoFinder output from all 47 species
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.11	OrthoFinder output from all 47 species
Ala_g04107	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
Aop_g18685	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001049.16	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01028887001	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.06	OrthoFinder output from all 47 species
Gb_33899	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species
LOC_Os02g57590.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	OrthoFinder output from all 47 species
LOC_Os05g08360.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.06	OrthoFinder output from all 47 species
MA_124463g0010	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	OrthoFinder output from all 47 species
Mp2g12880.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Pir_g60296	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.05	OrthoFinder output from all 47 species
Pp3c27_4160V3.1	FIB2, ATFIB2, Pp3c27_4160	fibrillarin 2	0.03	OrthoFinder output from all 47 species
Sam_g13274	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.08	OrthoFinder output from all 47 species
Smo171051	FIB2, ATFIB2	RNA processing.RNA modification.rRNA/tRNA...	0.05	OrthoFinder output from all 47 species
Solyc03g025270.3.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.1	OrthoFinder output from all 47 species
Spa_g31178	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.06	OrthoFinder output from all 47 species
Zm00001e023572_P001	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	71	297

External Links

No external refs found!

Ceric.01G068400.1 (FIB1, ATFIB1, ATFBR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation