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  5. Ceric.01G012400.1

Ceric.01G012400.1 (Ceric.01G012400)


Aliases : Ceric.01G012400

Description : not classified & original description: pacid=50592360 polypeptide=Ceric.01G012400.1.p locus=Ceric.01G012400 ID=Ceric.01G012400.1.v2.1 annot-version=v2.1


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.01G012400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G17616 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059183 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g075176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G123400.1 Ceric.01G123400 not classified & original description: pacid=50591208... 0.09 OrthoFinder output from all 47 species
Dac_g09169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04085 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g09114 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 OrthoFinder output from all 47 species
LOC_Os07g31310.1 LOC_Os07g31310 Pentatricopeptide repeat-containing protein At4g17616... 0.04 OrthoFinder output from all 47 species
Lfl_g02279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.07 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Ore_g33799 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.06 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Tin_g11662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 429 487
IPR002885 Pentatricopeptide_repeat 225 285
IPR002885 Pentatricopeptide_repeat 509 558
No external refs found!