Solyc06g069480.3.1 (Solyc06g069480.3)


Aliases : Solyc06g069480.3

Description : 27.1.2 RNA.processing.RNA helicase Encodes a predicted protein with 30% identity with MER3/RCK. U5 small nuclear ribonucleoprotein helicase


Gene families : OG_01_0000762 (Gene family) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g069480.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.14 Gene family
GSVIVT01007875001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.06 Gene family
GSVIVT01010769001 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.02 Gene family
LOC_Os02g01740 Os02g0106966,... 28.1 DNA.synthesis/chromatin structure embryo defective... 0.03 Gene family
LOC_Os03g11470 Os03g0213400 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.08 Gene family
MA_10434991g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.02 Gene family
MA_81219g0020 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.06 Gene family
MA_81219g0030 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.02 Gene family
MA_823844g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.04 Gene family
MA_930633g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.02 Gene family
Smo178863 PACid_15410245 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.05 Gene family
Smo410613 PACid_15407024 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.05 Gene family
Zm00001d048095 GRMZM5G857708,... 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.11 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004179 Sec63-dom 1773 2084
IPR011545 DEAD/DEAH_box_helicase_dom 1292 1456
IPR011545 DEAD/DEAH_box_helicase_dom 444 617
IPR001650 Helicase_C 1569 1655
IPR001650 Helicase_C 670 819
IPR004179 Sec63-dom 942 1248
No external refs found!