Solyc06g064840.3.1 (Solyc06g064840.3)


Aliases : Solyc06g064840.3

Description : 27.3.24 RNA.regulation of transcription.MADS box transcription factor family a MADS box transcription factor expressed in the carpel and ovules SEEDSTICK (STK)


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g064840.3.1
Cluster HCCA cluster: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT3G57390 AGL18 AGAMOUS-like 18 0.02 Gene family
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT5G13790 AGL15 AGAMOUS-like 15 0.02 Gene family
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT5G60440 AGL62 AGAMOUS-like 62 0.02 Gene family
GSVIVT01000175001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01006592001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01008139001 No alias 33.99 development.unspecified Encodes a MADS box... 0.05 Gene family
GSVIVT01008140001 No alias 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
GSVIVT01009171001 No alias 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
GSVIVT01012250001 No alias 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
GSVIVT01015641001 No alias 33.99 development.unspecified Encodes a nuclear protein... 0.02 Gene family
GSVIVT01018450001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
LOC_Os01g10504 Os01g0201700 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os01g66290 Os01g0886200 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.03 Gene family
LOC_Os02g07430 Os02g0170300 27.3.24 RNA.regulation of transcription.MADS box... 0.04 Gene family
LOC_Os03g11614 Os03g0215400 33.99 development.unspecified Encodes a MADS box... 0.02 Gene family
LOC_Os03g54170 Os03g0753100 33.99 development.unspecified Encodes a MADS box... 0.02 Gene family
LOC_Os05g11414 Os05g0203800 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os09g02780 Os09g0116000 No description available 0.02 Gene family
LOC_Os12g10540 Os12g0207000 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.03 Gene family
MA_211156g0010 No alias 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
MA_6805g0010 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.01 Gene family
Solyc04g076280.3.1 Solyc04g076280.3 33.99 development.unspecified Encodes a nuclear protein... 0.04 Gene family
Solyc10g017630.2.1 Solyc10g017630.2 No description available 0.02 Gene family
Zm00001d017614 GRMZM2G160565 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d023955 GRMZM2G010669 33.99 development.unspecified One of two genes (SHP1 and... 0.03 Gene family
Zm00001d028217 GRMZM2G032070,... 33.99 development.unspecified MADS-box protein, binds K... 0.04 Gene family
Zm00001d031620 GRMZM2G159397 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d037737 GRMZM2G052890 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
Zm00001d039434 GRMZM2G471089 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
Zm00001d041781 GRMZM2G160687 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.02 Gene family
Zm00001d044899 GRMZM5G814279 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 15 62
IPR002487 TF_Kbox 88 176
No external refs found!