Solyc06g053380.3.1 (Solyc06g053380.3)


Aliases : Solyc06g053380.3

Description : 20.1 stress.biotic encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. homolog of carrot EP3-3 chitinase (EP3)


Gene families : OG_01_0000294 (Gene family) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g053380.3.1
Cluster HCCA cluster: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT2G43580 No alias Chitinase family protein 0.04 Gene family
AT2G43620 No alias Chitinase family protein 0.03 Gene family
GSVIVT01038126001 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.05 Gene family
LOC_Os02g39330 Os02g0605900 20.1 stress.biotic encodes an EP3 chitinase that is... 0.05 Gene family
MA_159244g0020 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.03 Gene family
MA_44734g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_741127g0010 No alias 20.1 stress.biotic Chitinase family protein 0.02 Gene family
Smo426710 PACid_15410374 No description available 0.03 Gene family
Zm00001d025753 GRMZM2G005633 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA InterProScan
BP GO:0006032 chitin catabolic process IEA InterProScan
BP GO:0016998 cell wall macromolecule catabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 242 289
IPR000726 Glyco_hydro_19_cat 88 236
No external refs found!