AMTR_s00131p00066980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00131.39

Description : 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea


Gene families : OG_01_0005403 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005403_tree ,
OG_02_0004155 (LandPlants) Phylogenetic Tree(s): OG_02_0004155_tree ,
OG_03_0004968 (SeedPlants) Phylogenetic Tree(s): OG_03_0004968_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00131p00066980
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 Archaeplastida
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 Archaeplastida
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 Archaeplastida
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 Archaeplastida
MA_336179g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_48628g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c14_19380V3.1 No alias Nucleic acid-binding proteins superfamily 0.03 Archaeplastida
Solyc04g072036.1.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.08 Archaeplastida
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.13 Archaeplastida
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 LandPlants
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 LandPlants
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 LandPlants
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.03 LandPlants
MA_336179g0010 No alias no hits & (original description: none) 0.07 LandPlants
MA_48628g0010 No alias no hits & (original description: none) 0.05 LandPlants
Pp3c14_19380V3.1 No alias Nucleic acid-binding proteins superfamily 0.02 LandPlants
Solyc04g072036.1.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.07 LandPlants
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.13 LandPlants
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 SeedPlants
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 SeedPlants
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 SeedPlants
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 SeedPlants
MA_48628g0010 No alias no hits & (original description: none) 0.05 SeedPlants
Solyc04g072036.1.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.07 SeedPlants
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.12 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003029 S1_domain 382 444
No external refs found!